NC State
Fikret Isik

Workshop:
Genetic Data Analysis for Plant and Animal Breeding

 

Save the date!

September 23-27, 2019,
Montepulciano, Tuscany, Italy

 

Organized by:
North Carolina State University, USA
University of Florence, Italy

Organizing committee:
Dr. Francesco Tiezzi (NC State University), Email:  f_tiezzi@ncsu.edu
Dr. Riccardo Bozzi, (University of Florence), Email: riccardo.bozzi@unifi.it

Instructors:
Christian Maltecca (NC State University, Animal breeding),
Francesco Tiezzi (NC State University, Animal breeding),
Fikret Isik (NC State University, Forest Tree Breeding),
Guest lecturer (NC State University, Crop Breeding).

Registration:
Registration is open. The first registered 30 (maximum) people will be admitted to the workshop. The application will be closed once the limit is reached. If the workshop is cancelled for any reason registration fees will be refunded.

Workshop registration cost is $1150 USD. Registration includes lunches, two coffee breaks per day, a welcome and a farewell dinner. It does not include lodging and travel expenses.

Click here to register to the workshop.

 

Location:
The workshop will be held in the historic town of Montepulciano (province of Siena, Italy). The town provides a scenic location on the rolling hills of Tuscany. Montepulciano is well connected to the airports of Florence and Rome by public transportation. Private transportation can be provided under request at an additional cost.


Photos: https://commons.wikimedia.org/wiki/Category:Fortezza_(Montepulciano)

 

Lodging and transportation:

There are various lodging options available in the historic town. Most of the hotels or B&B are within the walking distance from the workshop location.

For transfer and lodging arrangement, please contact:

Valdichiana Living Tours & Vacation Tuscany
Piazza Grande, 7 53045 Montepulciano (Siena)
T. +39.0578 717484
F. +39.0578 752749

Webpage: https://www.valdichianaliving.it/en
In the website click on “BOOK” tab, and select ‘Montepulciano” in City dropdown menu.
Email: info@valdichianaliving.it

 

Tentative workshop outline:
The workshop will mostly follow the textbook Isik-Holland-Maltecca (2017) Genetic data Analysis for Plant and Animal Breeding with hands-on examples.

The tentative outline is as follows:

  • Theory of linear mixed models
  • ASReml software basics and options
  • Breeding values and genetic values
  • Multi environmental trials using factor analytic models
  • Spatial analysis of field test data
  • Explanatory marker data analysis
  • Imputing missing genotypes
  • Realized genomic relationships matrix and GBLUP
  • Marker-trait associations
  • Genome-wide selection

Software:
The exercises will demonstrate use of ASReml, R packages, and additional tools for data analysis. Some familiarity with R syntax will be expected. A temporary free license for ASReml will available at the time of workshop.

About the Workshop:

  • The workshop will be taught at an intermediate to advanced level. Participants are expected to have some understanding of the theory of mixed models.
  • This is a hands-on workshop. Participants are expected to work on exercises related to crops, animal and forest trees. You may bring your own laptop and your own data to work on after lectures.
  • Workshop format: Four sets of lecture + exercise per day. Each set will be a about 30-minute lecture and 60-minute exercise. See example below.

Daily schedule (5 days total):

  • 08:30 – 10:00 – Lecture 1
  • 10:00 – 10:30 – Break
  • 10:30 – 12:00 – Lecture 2
  • 12:00 – 13:30 – Lunch break 
  • 13:30 – 15:00 – Lecture 3
  • 15:00 – 15:30 – Break
  • 15:30 – 17:00 – Lecture 4